allhex | utility function: get all hexamers in upstream sequence for an ORF |
buildUpstreamSeqs2 | workflow component - build an upstreamSeqs instance from a FASTA read |
chkAllUS | analyze relationship between motif frequency and binding intensity for selected motif and TF |
chkMotif4TF | analyze relationship between motif frequency and binding intensity for selected motif and TF |
getUpstream | Class "upstreamSeqs" |
harbChIP | Experimental Data Package: harbChIP |
keys | Class "upstreamSeqs" |
keys,upstreamSeqs-method | Class "upstreamSeqs" |
Nmers | Class "upstreamSeqs" |
Nmers,numeric,character,upstreamSeqs-method | Class "upstreamSeqs" |
organism | Class "upstreamSeqs" |
organism,upstreamSeqs-method | Class "upstreamSeqs" |
sceUpstr | Biostrings representations of S. cerevisiae upstream regions |
seqs | Class "upstreamSeqs" |
seqs,upstreamSeqs-method | Class "upstreamSeqs" |
show,upstreamSeqs-method | Class "upstreamSeqs" |
upstreamSeqs-class | Class "upstreamSeqs" |